Questions related to data used in testing computational methods.

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What are the indications of the data separation?

In other words, let's say we have a data representation as in the image below, which is generated from the PCA, the projection of the data onto the first two PCs. As it's shown in the 2-D space, the ...
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1answer
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Similarity of two CSV files (or more?)

A CSV file is characterized by a header, describing the n datarows to come. The header is a text string separated by a separator. A CSV header might look like (C1) ...
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1answer
96 views

Open Source MRI Image Stacks

I'm working on a voxel-based modelling application and one of the features that I've implemented is a method to do a 3D mesh reconstruction from a series of 2D image slices (similar to an MRI). I've ...
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Fuzzy Logic in Matlab with missing values

In my data set for a particular observation there are data on 5 variables say A,B,C,D,E. I use Hamacher product by taking two variables at a time. That is I combine variables A and B and ...
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1answer
39 views

Simple Path to Route Algorithm

I'm currently conducting research into subway paths, but stand in front of a problem, with no programming knowledge and an extremely short time-limit. Probably the question I am asking is trivial, ...
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1answer
88 views

Testing 1D root-finding procedures for robustness

How can I test whether a given 1D root-finding procedure is robust? I know that there are data sets and resources online for different kinds of optimization, but I have yet to find anything with ...
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3answers
144 views

Test set for linear solvers

Lets assume I have a iterative linear system solver, e. g. this one. Whats the typical approach on verifying and testing this kind of solvers? Is there a standard test set of linear systems one ...
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1answer
54 views

Finding maximum value in huge dataset

I am working on a project involving some pattern recognition. For this I need to find the maximum value in a huge multidimensional dataset. For example I have a discrete 5-dimensional space containing ...
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1answer
145 views

How to recover the 3x4 pinhole camera from 9 parameters

I downloaded the bundle adjustment data from this link: original data for bundle adjustment which is the supporting data for a paper titled: Bundle Adjustment in the Large I want to use the data ...
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2answers
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Parameter Fitting: Need measure of data 'support' for a parameter solution

I am estimating parameters on a dataset that would, for the most part, result in a weakly constrained solution. The dataset however also contains a few more data points that make the solution well-...
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1answer
399 views

how to know cylinder volume in pixels?

I have a 3D point cloud representing ad object. I use a 3D cylinder to fit this object in the point cloud, so I check if each point is inside the cylinder and, if it is, then I assign a weight to that ...
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1answer
59 views

Is it possible to find a formula for a set of number from the result? [closed]

I have these two sets of number, I also have a result. Is it possible to compute the relation between them so that I can figure out how the result is generated ? for example I have : Set A=4 6 12 25 ...
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1answer
160 views

Test set non linear solver

what is your preferred test set to test quality of non linear solver? this could be set of data, model and results obtained with some benchmark solver, or simply a panel of test functions that could ...
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927 views

Testing numerical optimization methods: Rosenbrock vs. real test functions

There seem to be two main kinds of test function for no-derivative optimizers: one-liners like the Rosenbrock function ff., with start points sets of real data points, with an interpolator Is it ...
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3answers
92 views

Where can I find public datasets of images mostly dominated by contour?

I am about to start research for my thesis. I am trying to find public datasets of images mostly dominated by contour meaning (An outline, esp. one representing or bounding the shape or form of ...
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3answers
613 views

How to handle large numbers of output data sets from a simulation/sensitivity analysis?

Somewhat related, but I think the question is distinct enough to justify a separate question. As a bit of background, I come from a observational/statistical Epidemiology background, working with ...
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1answer
303 views

Generalized least squares gradient of a vector field

For computing the gradient of a scalar field, one can use the weighted least squares method as described in the paper Revisiting the Least-squares Procedure for Gradient Reconstruction on Unstructured ...
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2answers
714 views

Is there any 2D shape repository?

As far as I see, there are many repositories for 3D shapes. But in FEM and many other applications, a planar mesh domain is also very common. However, I did not find a mesh repository specially ...
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1answer
315 views

Where to find data sets for testing minimum vertex cover algorithm for bipartite graphs?

I'm playing with simple implementations of algorithms to find minimum vertex cover/maximum cardinality matching in bipartite graphs. However, I seem to have trouble googling for some test data sets ...
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3answers
743 views

List of data munging libraries

I am trying to put together a complete list of all of the tools that computational scientists have found useful when trying to munge data, i.e. take data in one format, extract the useful bits, and ...
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4answers
2k views

Where can I find a database of simple chemical structures in XYZ format?

As from Title. Where can I find a database of simple chemical structures in XYZ format, possibly with a simple CAS -> XYZ or InChi -> XYZ REST service ?
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17answers
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Where can one obtain good data sets/test problems for testing algorithms/routines?

In evaluating the quality of a piece of software you are about to use (whether it's something you wrote or a canned package) in computational work, it is often a good idea to see how well it works on ...