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1answer
45 views

Sparse generalized eigensolver using OpenCL

I would like to solve a generalized eigenproblem of real sparse symmetric matrices. Is there an efficient library which utilizes OpenCL in order to find a limited amount of the smallest eigenvalues in ...
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0answers
47 views

generalized eigenvalue problem, SLEPcEigenSolver no eigenvalues with negative reals

We are working on the model of a kinematic fluid dynamo in FEniCS. It tries to explore whether a magnetic field can be excited if a conducting fluid flows with a certain velocity field through some ...
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0answers
34 views

Eigenvalues from graph (modal)

I am a power engineer analyzing the dynamic response to system events. I am trying to re-create a modal analysis function from older software in python. In this context modal analysis is taking a ...
2
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2answers
107 views

How to correctly normalize modulus and phase of an eigenvector?

I am solving a linear stability problem using finite element discretization. Then, I have a generalised eigenvalue problem: $$ \lambda M x = J x.$$ I obtain complex eigenvalue and eigenvectors from ...
3
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2answers
49 views

Is it possible to use Eigtool for generalized problem pseudospectra?

I would like to use the Eigtool of professor Trefethen for pseudospectra but I have a generalized eigenvalue problem to solve: $$ \lambda M x = K x. $$ It seems that Eigtool takes only one matrix as ...
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2answers
116 views

How can I prove that two eigenvectors are orthogonal?

I obtained 6 eigenpairs of a matrix using eigs of Matlab. How can I demonstrate that these eigenvectors are orthogonal to each other? I am almost sure that I ...
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1answer
48 views

How does the animation work in eigenvalue problem of FEM

I have used free vibration analysis in FEM. After analysis, we can usually use animation to see the motion of each eigenmode (In Abaqus or Comsol, I would choose either half harmonic or full ...
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0answers
69 views

Arpack and Matlab give different values for eigenvalues

I am solving a generalized eigenvalues problem with inversed complex shift: $$(M-\sigma J)^{-1}J \boldsymbol{x} = \boldsymbol{x} \nu \enspace .$$ My matrices are obtained from a finite element ...
2
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1answer
107 views

Computational methods for finding the energy eigenvalues of the time-independent Schrodinger equation with arbitrary potential

I have seen in some papers that the energy levels in some arbitrary potential are specified. How can one find the energy levels in such arbitrary potentials. For example, $V(x)=\sin^2(x/2)$ with ...
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0answers
23 views

Minimum effort merging of two sets

I have the following problem. I have two sequences of elements $A = [a_1,a_2,\cdots,a_n]$ and $B = [b_1,b_2,\cdots,b_m]$. I can build a matrix $D[n \times m]$ where $d_{ij} = d(a_i,b_j)$ My greedy ...
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0answers
28 views

Locally evaluate nonlinear dynamic system's stability using eigenvalues

I'm working with Computational Neuroscience. I have a large Synaptic Matrix (x axis: presynaptic NeuronID, y axis: postsynaptic NeuronID) in a Modular network. This matrix is close to a random one and ...
0
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1answer
78 views

Armadillo eig_sym() for extracting eigenvalues. Is it parallel at all? [closed]

After wasting 3 days with scalapack, I gave up and moved to Armadillo, considering it uses lapack underneath its beatiful and easy interface. I would like to calculate the eigen values and eigen ...
4
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1answer
57 views

Correctly orthogonalizing and normalizing eigenvectors of a non-hermitian problem

I have some non-hermitian matrix $A$, that I have the left and right eigenvectors. (Calculated using SLEPc, by finding the eigenvectors of $A$ and $A^H$). I'm not sure how to orthogonalize them ...
6
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1answer
112 views

Compute eigenvectors of a matrix with known eigenvalue spectrum

If I have already accurately known the eigenvalue spectrum (i.e. all eigenvalues) of a matrix, is there any efficient numerical algorithm to compute all the eigenvectors corresponding to these ...
3
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1answer
71 views

Derivative of a generalized eigenvalue problem

I want to compute the derivative of a generalized eigenvalue $\lambda$ which is solution of $A u = \lambda Bu$ ($A,B,u,\lambda$ all depend on $t$; in my case $A,B$ are known explicitly, and the ...
5
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1answer
121 views

roots of polynomials with small coefficients

I would like to compute the roots of a polynomial with exponentially small coefficients. $$ \sum_{n=0}^N a_n \frac{z^n}{\sqrt{n!}} \tag{$\ast$}$$ where $a_n$ are Normal random variables with mean ...
0
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0answers
103 views

Estimating the second largest eigenvalue

I am currently dealing with the following problem. I am given a matrix $A$ of order $n \times n$ where $n \leq 20.$ The principal $(n-1) \times (n-1)$ matrix of $A$ is symmetric and contains only ...
0
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1answer
242 views

Order of eigenvalue problem using c++ Eigen library

I have the following 6x6 matrix (taken from Google Books p. 129): For background info: All the entries depend on the momentum $k$. Getting the eigenvalues of this matrix for each $k$ corresponds to ...
2
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1answer
67 views

find the exact solution ref The finite element method using matlab by Kwon and Bang [closed]

The results found are as under how do we find the exact solution ref The finite element method using matlab by Kwon and Bang.Page no 280-281 Example no 8.10.1.
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0answers
64 views

Compute eigenvalues with Arpack

I am using Arpack to compute the eigenvalues of the problem $\lambda Mx = Ax$ with reverse shift method with complex shift. $A$ and $M$ are real, $M$ is symmetric. Then, I use znaupd e zneupd. I use ...
2
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1answer
150 views

Laplacian discretization for parametric curves

I know how to compute the discrete Laplacian of a graph and of a mesh (the Laplace-Beltrami operator). Is there an analogous definition for the computation of the Laplacian of a parametric curve ? ...
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0answers
155 views

eigs routine in octave

I am using octave and observed a problem with the eigs-routine for non symmetric matrices. Using GNU octave version 3.8.1 the code below gives significant difference of eigenvalues although same ...
1
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1answer
67 views

Parallel Monte Carlo simulation using PETSc

I am trying to do Monte Carlo simulation for a large problem which requires eigensolution of a matrix for each sample. The matrix itself is quite large so much so that I want the eigensolution itself ...
0
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2answers
55 views

Computing eigenpairs of singular matrix with ZGEEV?

I've never run into a singular matrix before, so bear with me. I have a complex non-symmetric matrix (about 1000 x 1000) that I know has a couple zero eigenvalues. It isn't guaranteed to be ...
0
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1answer
79 views

Solve eigenvalue problem using finite differences without vectorization

I am interested in solving the problem $-A u = \lambda u$ on a finite differences grid on a square. In my case, the operator $A$ is of the type $-\Delta + \mu I$, where $\mu$ is there to impose some ...
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0answers
99 views

ARPACK gives different answers from Matlab and NAG

I'm playing with ARPACK. I looked into the examples they provide, zndrv4.f illustrating the usage of the routine znaupd, in the directory of ARPACK/EXAMPLES/COMPLEX/. I also came cross NAG Fortran ...
1
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1answer
45 views

LAPACK DGGEVX: BALANC option

I'm using DGGEVX routine from LAPACKE with BALANC option as shown below, but to my surprise changing BALANC option from 'N' to ...
0
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0answers
155 views

I am looking for a complex sparse matrix EigenVector solver for GPGPU; preferably CUDA

So far the closest I've found is ViennaCL, which has a Lanczos implementation for Eigenvalues. It is not clear that EigenVectors are produced by this library. Does anyone here know whether ViennaCL ...
2
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2answers
474 views

Eigenvectors: MATLAB vs LAPACK DGGEV or DGGEVX

If we call LAPACK DGGEV or DGGEVX routines for two badly-conditioned matrices in a C++ code, will we get the same eigen-values ...
1
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0answers
31 views

Eigenvalues and Timestep restriction Follow up

This is a follow-up question to the previous questions I had on eigenvalues. Please let me know if I should edit the previous question itself for asking this. If the eigenvalues of a matrix ...
3
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1answer
179 views

Eigenvalues and Timestep restriction

For an equation of the kind $u_t=Au$, time step is usually defined by ensuring that the eigenvalues are within the stability region of the time-stepping scheme employed. If the eigenvalues are on ...
0
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0answers
51 views

smallest eigenvalues for linear elasticity

I want to compute a few tens of the smallest eigenvalues of a linear system which is a discretization of a linear elasticity. In the presence of additional constraints like Dirichlet boundary ...
0
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1answer
81 views

Deflation for generalized eigenvalue problem

We know that principle component analysis (PCA) is a eigenvalue problem. Let $A$ be the covariance matrix of $X$, PCA aims to find the eigenvalue of $A$: $\max v'Av$, subject to $v'v=1$ Multiple ...
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0answers
76 views

Eigenvalue analysis of preconditioned partial differential operator

today, I encountered a confused problem by accident, but I have no ideas to deal with it fully. The question can be described as follows: for example, when we need to use FDM/FEM to discrete the ...
4
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2answers
177 views

Condition number from incomplete Cholesky factorization

I'm having difficulties patching together from what I read about obtaining the condition number of a real, symmetric, positive definite sparse matrix. In my code, I found that there is incomplete ...
0
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0answers
32 views

Time-stepper approach to eigenvalue problem

For a linear system $$ M \dot{u} = Au \qquad \textrm{or} \qquad \dot{u} = L u $$ The generalized eigenvalue problem is $$ A e = \lambda M e $$ We can use the time-stepper approach which essentially ...
0
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1answer
109 views

Diagonalize a circulant-plus-rank-one matrix

Suppose $A=uv^T$ where $u$ and $v$ are non-zero column vectors in $\mathbb{R}^n, n\geq 3$. $\lambda=0$ is an eigenvalue of $A$ since $A$ is not of full rank. $\lambda=v^Tu$ is also an eigenvalue of ...
3
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0answers
123 views

Method with low memory requirement for large-scale eigenvalue problem

I am working on the flow stability problem. In this work the main complication is solving generalized eigenvalue problem for a large scale Non-Hermitian matrix. I need only one eigenvalue (most left ...
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2answers
129 views

Azimuthal average in Fortran? Find indexes in Fortran?

I am working on an eigenvalue problem in fortran. I have used Lapack to solve the problem and get the eigenvalues and eigenvectors. This is done for $201\times101$ wavenumbers, only half the wavespace ...
4
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1answer
121 views

Applying Dirichlet b.c. to the Eigenvalue-Problem

If you use a FEM (on the variational formulation), you can discretize some continuous eigenvalue problem, $$L u = \lambda u \ \ \text{on} \ \Omega,$$ into some discrete, generalized eigenvalue ...
0
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2answers
536 views

Most efficient library to diagonalize exactly large hermitian or unitary matrices

I am working on a physics problem which requires obtaining the exact eigenvalues and eigenvectors of Hermitian and Unitary matrices numerically. Naturally I would like to ask the experts what are the ...
2
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1answer
170 views

Constructing matrix from eigenvalues, eigenvectors (Inconsistency with Matlab's eig())

Let $F_1$, $F_2$ be the foci points of an ellipse $\mathcal{E}\colon \mathbf{x}^TA\mathbf{x}=1$, $\mathbf{x}\in\mathbb{R}^2$, $A\in\mathbb{S}_{++}^{2}$. Let also $a$, $b$ be the semi-axes of ...
2
votes
1answer
327 views

Comparing Eigenvectors, Mathematica vs. Matlab

I am trying to create the same outputs in Mathematica and Matlab, however I am running into trouble aligning the eigenvectors with the eigenvalues, I think the Matlab is doing something slightly more ...
1
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1answer
129 views

Fast way to compute all eigenvalues of a dense Hermitian matrix

I am finding the eigenvalues of dense NxN Hermitian matrix which is calculated from a density operator in quantum physics. All the eigenvalues are needed as I need to calculate the sum of the absolute ...
1
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1answer
39 views

eigenvalue of small symmetric matrices

If I am to solve a symmetric eigenvalue system $A=QDQ^T$, where $A\in\mathcal{R}^{n\times n}$ and $n$ is small (in the range 4 - 64); I want all the eigenvectors and eigenvalues; There are two major ...
1
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1answer
233 views

How can QR iteration with complex matrices produce complex diagonal entries?

In Lapack (zhseqr) and matlab, the eigenvalues of a complex matrix are computed successfully. I notice that QR iteration or algorithm is involved with that process. QR iteration repeats to call QR ...
5
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1answer
315 views

Testing if a matrix is positive semi-definite

I have a list ${\cal L}$ of symmetric matrices that I need to check for positive semi-definiteness (i.e their eigenvalues are non-negative.) The comment above implies that one could do it by ...
0
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1answer
307 views

Flop counts for LAPACK symmetric eigenvalue routines DSYEV, DSYEVD, DSYEVX and DSYEVR

LAPACK has following 4 routines for calculating eigenvalues of a real symmetric matrix; namely DSYEV, DSYEVD, DSYEVX and DSYEVR (DSYEVR being the recommended one). If I were to calculate both ...
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3answers
319 views

Eigenvalues of a sparse banded nonsymmetric matrix from an elliptic operator

I have a sparse matrix coming from the discretization of a 3D elliptic PDE. The matrix is banded with seven non-zeros diagonals. The sparsity pattern of the matrix looks like this (the actual matrix ...
1
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1answer
101 views

Error propagation on GSL eigenvalues computation

The problem comes from the need to estimate the error propagation of the spectral norm computation of a square matrix $A$ of which I know the components' $A_{ij}$ absolute error. The fundamental step ...