12
votes
2answers
189 views

What would be the most helpful way to write code for a paper so that readers can clearly match the results to the code that generates them?

I'm writing a reproducible paper, and the paper has computational results that are generated by a Python script (a similar MATLAB script generates nearly identical results). I feel that the paper ...
10
votes
5answers
247 views

Increasing the archival longevity of code

Is there a published list of best practices to ensure longevity of code, with an eye towards reproducible scientific results? (e.g. open source, documentation practices, selecting dependencies, ...
28
votes
8answers
615 views

How do I make sure that the results of my simulations and the results in my paper are always in sync?

In one of my papers, I list some numerical results in addition to some figures. What I'd like to do is make sure that the numerical results in my paper always agree with the code. Right now, I just ...
19
votes
5answers
381 views

What material should I include with a journal article (or post online) in order to make my computational research reproducible?

Reproducibility has become more and more important in computational science research. (For instance, see this article by Roger Peng in Science; I'm aware of other such articles and web sites also.) ...
17
votes
6answers
678 views

What is the best way to do reproducible research if you need proprietary libraries?

Reproducible research in computation aims to make the code needed to generate the results in a computational paper available to other researchers so that they can run this code to reproduce the ...