When you find the eigenvalues $\lambda_n$ and corresponding eigenvectors $u_n$, some of them might be pairs of complex-conjugated eigenvectors $u_n=v_n\pm iw_n$ that correspond to complex-conjugated eigenvalues $\lambda_n=a_n\pm ib_n$.
In general, the modes associated with an eigenvalue and its eigenvector can be found as
$$x_n(t)=e^{\lambda_n t}\,u_n$$
Now for the case of complex-conjugated pairs of eigenvalues and vectors, choose only one pair of them and substitute them in the above relation. For instance, let's take
$$\lambda_n=a_n+ib_n,$$
$$u_n=v_n+iw_n$$
Notice that you could just as well choose the eigenvalue and vector with the "$-$" instead of the "$+$". Then plugging them in the relation for the mode $x_n(t)$ and simplifying (use Euler's formula for complex numbers and do some algebra) you find that
$$x_n(t)=e^{(a_n+ib_n)t}\,(v_n+iw_n)\Rightarrow$$
$$\Rightarrow x_n(t)=e^{a_nt}[\cos(b_nt)v_n-\sin(b_nt)w_n]+ie^{a_nt}[\sin(b_nt)v_n+\cos(b_nt)w_n]$$
In this way, you've decomposed the mode into its real and imaginary parts. For a linear eigenvalue problem, both the real and the imaginary part are each real solutions of the problem; so you find two real solutions that represent real displacement modes of your structure. You should redo the simplifying in the above relation, just to be sure I haven't missed anything there!