# What are the things I should keep in mind before doing an analysis of my gromacs simulation?

I did a liquid argon simulation at 100k. I forgot during analysis that I need to accommodate for the Periodic Boundary Conditions before doing any analysis which included distance. What are other such general things I should keep in mind during my analysis ?

I am rather novice to computational Science and might have missed even the most trivial things.

• The radial distribution function makes sense only up to $r = L/2$, where $L$ is the side of the box.