Questions tagged [algorithms]

A description of the specific steps needed to solve a particular problem in an unambiguous way, expressed in an abstract form.

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7
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2answers
2k views

Markov (Chain) image generators?

Markov Chains can be used to generate, or auto-complete, text. https://en.wikipedia.org/wiki/Markov_chain#Markov_text_generators Training text is read, and some information about the text is ...
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0answers
57 views

Where does the seemingly official number of certain algorithms come from?

There are a lot of algorithms which seem to have been supplied an official number, such as Algorithm 76, Hierarchical clustering using the minimum spanning tree. Another example is Algorithm 123, ...
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1answer
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tea bag flavors mixing algorithm [closed]

I bought three boxes of tea bags with different flavors (A, B, C). I wish to mix them in such a way that - there is never two consecutive bags of the same flavor (ABCCAB is avoided) ; - the mixing ...
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0answers
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FFT-based Image Rotation Algorithms More Accurate Than Chirp-Z?

We're currently using a Chirp-Z based implementation: R. W. Cox and R. Tong, "Two- and three-dimensional image rotation using the FFT," IEEE Trans. Image Processing, vol. 8, no. 9, pp. 1297–1299, Sep....
6
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1answer
368 views

Matching/Assignment Problem

I'm not sure how I can represent and solve the following problem. I have a list of sales (timestamp and quantity) and a list of corresponding inventory draws (timestamp and quantity). What I ...
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5answers
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How to solve block tridiagonal matrix using Thomas algorithm

Thomas algorithm can be used to solve a tridiagonal matrix: $$ \begin{bmatrix} {b_ 1} & {c_ 1} & { } & { } & { 0 } \\ {a_ 2} & {b_ 2} & {c_ 2} & { } & { }...
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1answer
160 views

Pivoting in Block LU

What are common methods to choose pivot blocks in Block LU (for non-SPD/non-Diagonally Dominant Matrices)?
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0answers
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Kernel independent fast multipole method for Yukawa potential [closed]

Has anybody used the KIFMM (https://web.stanford.edu/~lexing/fmm.pdf) for the Yukawa potential?
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2answers
76 views

Ranking Sewer Lines worst to best condition using Genetic Algorithm?

Problem I work for a municipality and we are trying to figure out which sections of sewer lines to replace first or at least identify areas that should be looked at. It was suggested I use a Fast ...
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0answers
197 views

Use of Morton Key to reduce number of grid points

I asked a question on Stack Overflow Performance Issue with VP Trees and Nearest Neighborsand I was not satisfied with the answer and so I thought I would reword my question for this site and post ...
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0answers
93 views

First order methods for a large scale semidefinite program

I am interested in solving the following semidefinite optimization problem: \begin{equation} \begin{split} \underset{X,\lambda}{\rm maximize} \;\;\;\;&\lambda^Tc \\ &-\mathbb{I} \le X \le \...
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1answer
66 views

Algorithm to find most similar elements in several groups

I'd like to find an algorithm that can solve the following problem: Consider 4 groups of numbers: Group 1: [10, 100, 1000], Group 2: [101, 15, 2000], Group 3: [20, 1500, 100], Group 4: [150, 3000, ...
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2answers
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An efficient way to numerically compute Stirling numbers of the second kind?

Is there an efficient way to numerically compute Stirling numbers of the second kind? An approximate (not exact) method would suffice. Something similar to the connection between factorials and gamma ...
3
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1answer
87 views

What is a “good enough” method of assigning values to n variables subject to basic bounding constraints while maintaining relative weights?

Given triples of $n$ floating point values $$(\min_1, \max_1, w_1), \dots, (\min_n, \max_n, w_n)$$ and a value $V$, what is a good algorithhm to assign values $v_i$ to each of the triples such that ...
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0answers
286 views

Maintain sorted ring buffer [closed]

I would like to insert elements into a ring (circular) buffer one at a time and maintain a permutation array which keeps track of the sorted elements in ascending order. To do this, I have adapted the ...
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1answer
464 views

Solving an equation in space and time using the Crank-Nicolson approach

Assume I have the following equation (light propagating in $z$-direction through the matter): $$id_zu+d^2_ru=0$$ with $u(z, r)$ being a complex wave. The time scale in this equation is $$t\equiv t_\...
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0answers
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What Derivative-free optimization method should I use when my initial guess is very good?

I am trying to minimize a function where my initial guess is quite close to the minimum. I'm trying to minimize $$f(q) = \text{angle}(qw_1q*, v_1) + \text{angle}(qw_2q*, v_2) + \text{angle}(qw_3q*, ...
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1answer
634 views

Why are Octrees used for Multipole space decomposition?

In most (all?) implementations of the Fast Multipole Method (FMM), octrees are used to decompose the relevant domain. Theoretically, octrees provide a simple volumetric bound, which is useful for ...
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2answers
225 views

Effective way to build the neighbor's list in MD

I'm trying to implement the following form of the cell/neighbor list method in my MD code. I have divided my simulation box into a fixed number of cells, and according to its positions, I have ...
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2answers
110 views

Algorithm to construct all distances of a system described by $3N-6$ distances

A non-linear molecule has $3N-6$ degrees of freedom ($N$ is the number of atoms; ignoring translation and rotation). Therefore, a set of $3N-6$ distances and/or angles is enough, to describe the whole ...
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1answer
107 views

Stable computation of ratio of sums of large numbers

I have two sets of large positive numbers $a_1,\ldots,a_n$ and $b_1,\ldots,b_n$. By 'large' I mean of the order of $10^{10}$. I want to calculate the ratio $$R = \frac{a_1 - a_2 + \cdots +(-1)^{n+1}...
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1answer
156 views

Find hidden sequence $a_n = a_{n-1} + T $ , with period $T$, given some “random” numbers

I have this data plotted on a graph in which all points have the same value on the y-axis, e.g a constant integer "c", while the x-axis is the time in seconds. So, for a c = 25 on the y-axis, there ...
4
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1answer
383 views

Using SVD to biorthogonalize left and right eigenvectors?

I have a set of left and right eigenvectors from an nonsymmetric eigenproblem, and I'd like to biorthogonalize them. I tried Gram-Schmidt, but this fails for most cases. I then read that the SVD is ...
5
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1answer
50 views

Transform from linear index of a packed triangular matrix to dense indices

Given indices $i,j$ s.t. $0\leq i \leq j <n$, the function $f(i,j)=i+j(j+1)/2$ maps 2d indices to linear indices in column major order. What is the fastest way to invert this function? My first ...
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0answers
106 views

Finding the smallest root of a function on $[0, \infty)$

I would like to find the smallest real root of a 1-D real-valued function $f(x)$ on the domain $x\in [0,\infty)$. In this problem, I can make the following guarantees on $f$: $f$ does have a root at ...
2
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1answer
171 views

how to calculate the determinant of a projection of matrix to a subspace

I have a matrix $J$, and I know there are 3 existing zero eigenvalues and their eigenvectors. I want to detect if there is one extra eigenvalue to go cross zero (if it is zero, its eigenvalue will ...
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0answers
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Fast Algorithms for the Simplicial Decomposition of a Convex Polytope in N-Dimensions

I'm in the process of constructing an algorithm which computes the Voronoi diagram of a set of points, but I now need a method to decompose each Voronoi cell into simplices. The information we have is:...
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147 views

Algorithm for group forming: as individual or in a preformed group

I have 20-80 users and 5-10 events with varying ranges of minimum and maximum number of free seats (2-4, 3-5, 2-6...). For example, with a range of 3-5 it is acceptable to only assign three users to ...
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0answers
59 views

Efficient initial identification of solid or liquid domains for a block structured Cartesian grid generation system

INTRO Within the last 5 days I was able to generate a block structured Cartesian grid generation system with a combination of Fortran,C++ and Python. I am running intersection tests of the ...
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0answers
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Space covering optimization

I have the following problem: In the space $E=\{1, 2, \dots, N_x\} \times \{1, 2, \dots, N_y\}$, I want to define $N_R$ rectangles $R_k=\{x_k^0, \dots, x_k^1\}\times\{y_k^0, \dots, y_k^1\}$ which ...
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1answer
1k views

Simple finite volume method for compressible Navier-Stokes equations

I am interested in writing a simple, cell-centered, 2D FVM code for the unsteady, compressible Navier-Stokes equations (including shocks). Most of my experience is with finite difference and finite ...
3
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2answers
245 views

Image hash similarity matching possible?

I have the following question: We have two face image files (JPEG), a Matrix of $128\times 128$ with values between 0-255. We would like to hash both image files using a function $f(x, key)$. Where I ...
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1answer
217 views

Can I convert CUDA core to CPU core and use it as cpu core while running any program?

I was using Metatrader5 and have designed a strategy for trading using MQL5 programming language. While I was running a Strategy Optimization process, I saw the it will need 10,00= iterations or ...
5
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1answer
214 views

Striking examples of success of local search algorithms

In N queens problem https://en.wikipedia.org/wiki/Eight_queens_puzzle, trying to find solution by backtracking encounters difficulties quite fast (even for SWI-Prolog, http://swish.swi-prolog.org/...
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1answer
612 views

MD Simulation: Reference for the Neighbor's List Method

With a rather basic knowledge in C++, I have written my own MD simulation code. Currently, I calculate forces in the most naive way: I go through all the atoms and account for their interactions. This ...
1
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1answer
42 views

Distribute sources among destinations

There are $n$ sources with the following positive volumes: $p_1, ..., p_n$ and there are $m$ destinations with the following positive volumes: $q_1, ..., q_m$. It is known that $p_1+ ...+ p_n=q_1+ ...+...
3
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1answer
108 views

Solve $A^{-1} b$ when one column is replaced

Given square matrix $A_0$, vector $b$, vector $A_0^{-1}b$ and matrices $A_1, A_2, \dots, A_k$, in which each $A_i$ is generated from $A_{i-1}$ by replacing one single column, I would like to find an ...
5
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0answers
66 views

Padua-type pointset for functions singular on line $x=y$

The Padua points $\mathrm{Pad}_{n} \subset [-1,1]^{2}$ are a unisolvent pointset with optimal growth of Lebesgue constant, described in detail here. With some work they can be used to generate a ...
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0answers
328 views

Open source implementation of Multiscale Combinatorial Grouping

I would like to use Multiscale Combinatorial Grouping for my PhD research. However, I am restricted to use open-source implementations and this one runs on Matlab. Does anyone know of an equivalent ...
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1answer
218 views

CPU and GPU influence on task parallel execution performance

This question is mainly about hardware, but also about software. In my current work I have approximately 68 millions of combinations that I am iterating through, in parallel. For each of those ...
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0answers
26 views

How does the MADS algorithm work in practice

Mesh Adaptive Direct Search (MASH) is an algorithm for black box optimization I want to understand an implement this method to solve some 2D multivariate blackbox function $f(x,y)$, but am having ...
0
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1answer
78 views

Which are some good algorithms and heuristics to calculate the similarity between two matrices?

Say I have a matrix like this: \begin{bmatrix} 0 & 0 & 0 & 1 \\ 0 & 0 & 1 & 1 \\ 0 & 1 & 1 & 1 \\ \end{bmatrix} And this one: \begin{bmatrix} ...
4
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1answer
2k views

Applying the result of Cuthill-McKee in SciPy

I have applied SciPy's implementation of the Cuthill-McKee algorithm to a $48 \times 48$ sparse non-symmetric matrix in Compressed Sparse Row (CSR) format and the output is an array of length $48$ ...
5
votes
1answer
196 views

Efficient algorithm for a matrix product

Recall that a unit lower triangular matrix $L\in\mathbb{R}^{n\times n}$ is a lower triangular matrix with diagonal elements $e_i^{T}L e_i = \lambda_{ii} = 1$. An elementary unit lower triangular ...
0
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1answer
68 views

Adaptive gradient descent

I want to minimize some multivariable function $\Delta(\alpha, \beta)$. I know that this function has a zero point, $\Delta(5, 5) = 0$. Starting from some $(\alpha, \beta)$ close to $(5,5)$ (e.g. (4....
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0answers
46 views

Finding “hidden” subassemblies: Suggestions for algorithms

I'm faced with an interesting problem and need some help finding existing best techniques to solve it. The setup is that we're analyzing a large system trying to find what I call "hidden subassemblies....
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0answers
96 views

Sequential Quadratic Programming for Quadratically Constrained Quadratic Programs

A standard Quadratically Constrained Quadratic Program (QCQP) is of the form: $$ \underset{x}{minimize} \frac{1}{2}x^TP_{0}x + q_{0}^{T}x $$ $$ subject \; to \quad \frac{1}{2}x^TP_{i}x + q_{i}^{...
2
votes
0answers
62 views

Parallel compact schemes using the Parallal Diagonal Dominant (PDD) algorithm

I would like to use the PDD algorithm developed by Sun to solve tridiagonal matrices in parallel for the following compact finite difference scheme: $ \begin{align} \dfrac{1}{4}f^{'}_{i-1} + f^{'}_i +...
1
vote
1answer
640 views

Iterative camera calibration - No convergence

I am trying to implement the algorithm from the research paper "Accurate Camera Calibration using Iterative Refinement of Control Points" from Datta et al. Running many iterations does not show a ...
11
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2answers
6k views

How does the computational cost of an mpi_allgather operation compare with a gather/scatter operation?

I'm working on a problem that can be parallelized by using a single mpi_allgather operation or one mpi_scatter and one mpi_gather operation. These operations are called within a while loop, so they ...

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