Questions tagged [data-analysis]

Data Analysis is the process of evaluating data using analytical and logical reasoning to examine each component of the data provided.

Filter by
Sorted by
Tagged with
2
votes
1answer
61 views

How to check experimental data against a theoretical curve? (Python)

I am trying to check the agreement of a dataset against a theoretical curve, specifically a bandstop filter in an RLC circuit. I have generated a function which describes the curve we expect from the ...
2
votes
0answers
119 views

Computing the structure factor from positions and radial distribution function [closed]

I'm currently analysing some spatial point patterns that come from some fluid dynamics simulations and I'm having some difficulty computing the structure factor, $S(\pmb{k})$, from both the positions ...
0
votes
1answer
31 views

How to improve the efficiency of periodicity detection for long time based lined and gapped datasets

Our data set has $10^4$ data points, but has a long baseline and many gaps. As the histogram shows, the horizontal-axis is time and most of the time, there are no data. The vertical-axis is data ...
1
vote
3answers
106 views

Clustering with points lying along different 3D planes

I have a bunch of data points in 3D that lie along a few planes. What would be the best approaches to estimate the normals of these planes? Edit: There are roughly equal number of points lying along ...
1
vote
1answer
61 views

Is there a better way to do run time analysis than this?

I currently have 2 different functions with options to vectorise them: acc_rej_sine(max_iter, algorithm=None) and ...
2
votes
0answers
35 views

GPGPU/FPGA programming for Combinatorial Analysis

Recently, I have taken an interest in performing combinatorial analysis for the game of 21 (blackjack) and attempted to use my AMD APU to try and thread the program via the 4 cores on the chip. ...
0
votes
1answer
91 views

Converting ROOT Tree to HDF5

I have a TTree in ROOT with 1000 events and 15 variables associated to each of them. I would like to convert this in its entirety to an hdf5 dataset. How do I organise my data in HDF5 Groups such that ...
2
votes
1answer
68 views

Which statistical method should I use for comparing machine run-time of two algorithms?

I am comparing the run-time of two algorithm by solving different instance of the problems. Sample of my data: ...
2
votes
0answers
30 views

Identifying the time window at which a meteorological factor influences tree growth the most

This is a problem I am encountering in a research project. I have thought of a naive approach to solve it which relies on many assumptions, is not guaranteed to work, and would be tedious and ...
1
vote
0answers
21 views

Validating a Markov chain and Bagging to find overall model

let´s say I estimated a Markov chain by splitting my data into traning and test data, and estimating the transition matrix for the traning data yields $$ P= \begin{bmatrix} p11 & p12 &...
0
votes
1answer
96 views

How much in depth should I cover Python? [closed]

I'm an undergrad who's studying electronics and fields like data sciences and mostly computing seem most interesting to me but have in-depth knowledge in neither. I learnt basic python last winter ...
1
vote
0answers
52 views

Implementing Frechet Distance on pandas data frame [duplicate]

I am working on a trajectory analysis project using python and its data science related libraries. I am planning to implement Frechet Distance algorithm for trajectory analysis, each trajectory has ...
0
votes
2answers
2k views

Python implementation for Frechet Distance

I am working on a trajectory analysis project using python and its data science related libraries. I am planning to implement Frechet Distance algorithm for trajectory analysis, each trajectory has ...
1
vote
0answers
26 views

Use custom defined metric(not matrix) in Javaplex

I'm about to get started trying to use Javaplex for the first time for some application in topological data analysis (TDA) and I want to use a custom defined metric. From looking over the documents, I ...
9
votes
1answer
3k views

What is the difference between Computational Science and Data Science? [closed]

Background: My PhD was in 'Computational Science'. My dissertation was on the analysis of X-Ray Diffraction Data and analysis of thermally perturbed nuclei in the overall dynamic analysis of the ...
0
votes
2answers
39 views

How are the outcomes that generated from different predictive models combined to get more accurate predictions?

The simple average is commonly used to combine the predictions out of different predictive models. Apart form the simple average, what are the other methods that can be used for combining the ...
1
vote
1answer
300 views

FFT (Numerical Recipes in FORTRAN 77)

I am trying to use the subroutine twofft which in turn uses subroutine four1 in the book(Numerical Recipes in Fortran) to ...
6
votes
1answer
236 views

Is resampling more accurate than block average for statistical analysis of data?

I'm working in laboratories where molecular dynamics data are almost always analysed usign block average as stated in the famous Allen and Tildesley book. We divide the datas in blocks of size $M$ on ...
3
votes
1answer
456 views

Similarity of two CSV files (or more?)

A CSV file is characterized by a header, describing the n datarows to come. The header is a text string separated by a separator. A CSV header might look like (C1) ...
1
vote
1answer
60 views

library for arithmetic operations on unstructured xyz

I've got several sets of xyz-data where x,y are coordinates and z is a 'value'. I want to be able to do simple arithmetic operations on these data. The x,y locations are not necessarily the same in ...
3
votes
1answer
379 views

what is the best theory/model to use for prediction in multivariate data?

I use software for pollutant propagation on rivers that takes as input a set of parameters ($p_1,p_2,\ldots,p_n$) and creates an output file which is basically a matrix where on each row the ...
1
vote
1answer
73 views

Finite difference for Lighthill source term

I have experimental data containing horizontal and vertical components of speed and I need to evaluate this: $$ \frac{\partial^2}{\partial x_i \partial x_j}\left(v_iv_j\right) $$ Denoting $U$ as ...
3
votes
1answer
953 views

Is there a relationship between the covariance matrix and the partial derivative?

Suppose that there are $N$ pieces of data, each of which contains $M$ parameter values such that $N >> M$. If we put this information into matrix form ($N$ rows, $M$ columns) and then compute ...
2
votes
0answers
100 views

similarity/distance measurement between two ranked sequence

Is there an efficient way to measure similarity/distance between two sequences of ranked numbers/letters. The two sequences are of different length, and only have some elements in common? For example,...
1
vote
0answers
43 views

Manipulating/Extracting Data and Developing Methods - Language Choice [closed]

As a general programming enthusiast and aspiring Bioinformatician student I have an intermediate understanding of computing (languages) as well as Java, and to a lesser extent C++. Having knowledge in ...
5
votes
1answer
243 views

Iterative Cunnigham correction in Millikans oil-drop experiment

I tried to write an analysis program in python for the Millikan experiment based on a paper from Jones "The Millikan oil‐drop experiment: Making it worthwhile" However, I cannot reproduce the ...
0
votes
1answer
488 views

Power series regression linear fit in VBA excel

I wrote a program that calculates the best fit in VBA excel for the following model $$ y_k=c_1x_k+c_0+c_{-1}(x_k)^{-1} $$ solving for the best fit parameters $c_1$, $c_0$, and $c_{-1}$. However I ...
2
votes
1answer
40 views

Simple Path to Route Algorithm

I'm currently conducting research into subway paths, but stand in front of a problem, with no programming knowledge and an extremely short time-limit. Probably the question I am asking is trivial, ...
0
votes
1answer
109 views

Can Box-Cox transformation be applied for data of this form?

I have data of the form: X Y 3.53 0 4.93 50 5.53 60 6.21 70 7.37 80 9.98 90 16.56 100 And I want to find out $n$ so that this can be ...
0
votes
1answer
1k views

Gonzalez algorithm

I'm getting confused about implementing the Gonzalez algorithm for k-center clustering. The algorithm is : let $S$ be a data set Choose $z_1 \in S$ arbitrarily. Number $z$ is center. (In general ...
0
votes
2answers
800 views

What is 'SOLVER' in R and Statistics/Analytics ?

**strong text**a) I tried to research on what exactly is a SOLVER only to find a not clear-cut simple answer. My doubts still remain after going through several sites full of discussions about it. I ...
5
votes
2answers
278 views

Dimensionality reduction of the domain of f(x)

I'm wondering if there is something analogous to a PCA for data sets where there is a dependent variable. (Though I am interested in any method of dimensionality reduction, PCA is just an example.) ...
3
votes
1answer
128 views

Monte Carlo Simulation - Random Number Motivation

For Monte Carlo simulations, or any other numerical methods that rely heavily on the quality of the pseudo-random numbers generated (i.e even/desired distribution on a certain domain) for that matter, ...
8
votes
4answers
531 views

Should I use a database to handle large amounts of results?

Background: I am currently running a large amount parameter variation experiments. They are being run in Python 2.6+, using numpy. These experiments are going to take about 2 weeks to run. Roughly I ...
1
vote
0answers
142 views

SciDB vs OLAP cube [closed]

I am working on good retrieval mechanism for big data systems. I am of view that multidimensional structures could be of great use for aggregations and querying . Multidimensional structures as ...
2
votes
2answers
266 views

Extracting time scales information from empirical cumulative distribution function

I have a stochastic process (a Markov chain actually) that has two absorbing states. I am using a difference equation to calculate the first passage time to either of the absorbing states. There are ...
0
votes
1answer
64 views

Finding maximum value in huge dataset

I am working on a project involving some pattern recognition. For this I need to find the maximum value in a huge multidimensional dataset. For example I have a discrete 5-dimensional space containing ...
3
votes
0answers
112 views

Spatio-temopral wavelet analysis

Am quite new to wavelet analysis and would like some help. I am performing a spatio-temporal analysis of monthly gridded rainfall data. With PCA, I can reduce the dimension of the rainfall data into a ...
10
votes
2answers
10k views

Pandas limitations and its alternatives in Python

I read somewhere that Pandas was first developed for the financial world, at least not especially for natural sciences (physics, biology and so on), so is there any similar data analysis Python ...
2
votes
3answers
317 views

R/C/C++ library for N-dimensional arrays

I'm looking for a library that is either in R or easily wrappable with R, that can do the following things: construct and subset N-dimensional arrays perform operations such as ...
6
votes
1answer
948 views

Fit my data to Lissajous curve in Matlab

I'm acquiring data which looks like this: Theoretically it should be possible to fit it with a Lissajous curve, which is typically defined in the following way: $x = A \sin(a t + \delta)$, and $y = ...
1
vote
1answer
78 views

Line scan in a 2D histogram

So I have a 2D histogram, in the third dimention are the counts. What I want to achieve is by choosing two random position, make a plot of a 1D histogram along the line that passes through the two ...
1
vote
0answers
39 views

Spectra of the energy flux VS transfer spectra?

In direct numerical simulation of turbulence what is the advantage to look at the spectra of the energy flux rather than the transfer spectra? The transfer spectra corresponds to the triple-velocity ...
1
vote
1answer
36 views

Adding data with different abscissas

This question may be better suited for an Astronomy Stack Exchange site, but I figured I'd ask here. Say I have measurements of something as a function of radius for a number of objects. Here's an ...
3
votes
2answers
66 views

Parameter Fitting: Need measure of data 'support' for a parameter solution

I am estimating parameters on a dataset that would, for the most part, result in a weakly constrained solution. The dataset however also contains a few more data points that make the solution well-...
1
vote
1answer
68 views

Extract clusters from a graph of absolute-distance edge

I don't know if I have formulated this problem right: I have tons of items and the distances between each pair of them. Feeding this data into some visualization tool, I am able to create a nice ...
2
votes
0answers
57 views

Error in treating non-uniformly spaced data as uniform

In discussing smoothing filters, Numerical Recipes p. 772 says ... irregularly sampled data, where the values $f_i$ are not uniformly spaced ... one can simply pretend that the data points are ...
3
votes
1answer
694 views

How to do local FFT on huge 3D vector data cell mesh and visualize it spatially?

Simulation type: I'm running a simulation with the OOMMF micromagnetics package http://math.nist.gov/oommf/ where are magnet is represented by a mesh of 3 million cells, it gets excited by a ...
1
vote
1answer
101 views

classification machinery needed

Consider a set of 7D vectors. Each vector belongs to one of four classes. After mapping to 3D with PCA and coloring each point according its class the dataset looks like as shown below: For the ...
1
vote
1answer
321 views

Clustering data based on the radius of a sphere

I have a data-set that has four columns [X Y Z C]. I would like to find all the C values that are in a given sphere centered at [X, Y, Z] with a radius r. What is the best approach to address this ...