Questions tagged [matlab]

Questions about the numerical programming language MATLAB.

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13 views

Mineral dissolution and solute transport around a solid

I am trying to simulate solute transport of acid (HCl) and consequent mineral dissolution around a grain (calcite). The governing equation for transport is the advection-diffusion equation, given as: ...
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48 views

Solve simultaneous differential equations with embedded functions and a parameter estimation

The aim is to solve the below equations and plot $m$ with time, i.e. $\frac{dm}{dt}$ $k$ is unknown and needs to be estimated. For the parameter estimation, the below values in the table for m versus ...
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61 views

Solute transport around a solid obstacle

I am a newbie in CFD and single/multiphase flow and transport in general. As part of my quest to learn, I am trying to model solute transport around a solid object in the center of a 2D domain. The ...
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2answers
113 views

Is there a Python version of the ODE tool pplane?

This is the same question as this one, except for Python instead of Mathematica. Basically, the MATLAB software pplane is a staple in ODE courses. Is there a Python equivalent? Sample outputs from ...
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2answers
86 views

Backward Euler + Quasi Newton(Broyden) method fails to solve Van der Pol's equation(Stiff ODE)

The first guess is using the forward Euler approach. The first jacobian is using finite differences. Then NR method is used to solve for the next iteration and Broyden's method is used to update the ...
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1answer
82 views

Find $x$ that satisfy $(I-A^*A)+x(\frac{A+A^*}{2})\prec0$ using LMI or SDP on Matlab

Given $A\in\mathbb{C}^{n\times n}$, I want to use LMI or SDP to find feasibility of $x>0$ in the following inequality: $$(I-A^*A)+x(\frac{A+A^*}{2})\prec0,$$ where $D\prec0$ means that $D$ is ...
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1answer
86 views

Type of computer used for computation

In some scientific papers I see that authors provide what type of simulation tool and what type of computer was used for computation. For example: The computations were performed using MATLAB in ...
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18 views

How can this attempt to implement a Milstein numerical approximation for an Ito process of multiple components be fixed?

I have been reading Kloeden and Platen's Numerical Solution of Stochastic Differential Equations, and have more or less been trying to systematically complete the various exercises therein as I go ...
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1answer
38 views

Best search algorithm for optimal weight factor in SOR method

I had written an algorithm that searches for the optimal weight parameter to be implemented in the successive-over relaxation (SOR) method which worked cleanly by vectorizing the interval and for ...
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1answer
102 views

2-norm and infinty norm of a system in controls

How to compute 2-norm or infinity norm of following system? i am confused whether to calculate using simple matrix theory "where it don't regard for s domain" or H2 and H-infinty norm. ...
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1answer
444 views

What is difference between L2 norm and H2 Norm?

When someone refers 2-norm of system,L2 and H2 are used interchangeably by author and is rather confusing. Even the matlab has different functions for H-infinity norm and L-infinity norm. as shown in ...
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1answer
34 views

relres in gmres MATLAB

I think the relres in MATLABis the form that relres = norm(M(b-Ax))/norm(M\b),when it smaller than tol then stop the iteration. I want to know how to change relres to norm((b-Ax))/norm(b). Or use ...
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2answers
181 views

Continuation of solution to $-\nabla\cdot (k(x,y)\nabla u)=f$

I'm trying to solve the following problem, I had previously opened another discussion for the implementation and well, it seems that it has turned out well, it can be found here. I need to calculate ...
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47 views

Can we solve can overdetermined coupled equations in matlab?

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1answer
94 views

Vectorization Matlab/Octave of Markov Matrix Powers

I have just created a code snippet in Octave/Matlab that aims to create a plot which shows the accuracy of an initial probability vector $\vec{\pi}$ derived from the transition probability matrix $\...
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1answer
133 views

How can I extract the banded or block diagonal part of a sparse matrix in MATLAB?

Given a large sparse (square) matrix in MATLAB, how can I extract the banded or the block-diagonal parts (of fixed size) of it efficiently? These are useful operations when prototyping and testing ...
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1answer
49 views

Efficient solution to linear system involving Kronecker sum in MATLAB

High dimensional finite difference problems often lead to linear systems of the form $$ A x = b, \qquad A = B_1 \oplus B_2 \oplus \cdots \oplus B_d, $$ where $\oplus$ denotes the Kronecker sum. $B_i \...
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1answer
242 views

What is the use of arrayfun if a for loop is faster?

This may not be so much of a scientific computing question but more of a MATLAB question, if that is the case, please feel free to close or migrate the question. Root-finding problems are commonly ...
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2answers
356 views

Implementing routine for $-\nabla\cdot (k(x,y) \nabla u)=f$ in Matlab

I am solving the Poisson Equation for 2D given by the following expression: $$-\nabla\cdot (k(x,y) \nabla u)=f$$ in a rectangle with Dirichlet conditions on the boundary using Matlab. In principle I ...
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88 views

Path constraints for state variables - fmincon, ODE45

My problem lies in constraining state variables (look for 23,24,25). I am currently using ODE45 to solve equations and fmincon to find best control variable.How would you go about solving this? Here ...
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2answers
563 views

Specifying ode solver options to speed up compute time

I'm specifying the 'JPattern', sparsity_pattern in the ode options to speed up the compute time of my actual system. I am sharing a sample code below to show how I ...
4
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1answer
102 views

How are Matrices Stored in MATLAB?

I have this simple question but I am trying to figure out why: Are matrices stored column-wise in MATLAB? If so then why? I theorize that they are stored column-wise because the memory does not have ...
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54 views

Can I get a symbolic solution for these coupled ODEs?

I found this IPython notebook called ‘Roller Coaster’ from", "numfys.net, where they model the movement of a ball over a path described by a third-degree polynomial $y(x)$ with slope $\...
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1answer
44 views

Round-off error step choice

In the Numerical Recipes in section 5.7.- Numerical derivatives the choice of the step size $h$ in the numerical derivative should lead to a difference between $x$ and $x+h$ representable by an exact ...
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1answer
210 views

MATLAB : find an algorithm to inverse quickly a large matrix of symbolic variables

I have to solve the equality between 2 matrixes 12x12 containing a lot of symbolic variables and with which I perform inversion of matrix. There is only one unknown called "...
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37 views

Using event function to shift between 2 sets of ODE

I have a bunch of ODEs I am trying to solve using ode45 in MATLAB. I have hidden the details of the equations to keep it simple (so as to build a general algorithm)! \[\frac{dR}{dt}= F_{1}(R,N) \quad\...
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34 views

Problem with Numerical DAE Implementation of Nernst-Planck Equations

I write to you all today in order to clarify if I implemented my model correctly into MATLAB. I will outline the following: analytical governing equations, my discretization for the equations and ...
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119 views

Error $L_{2}$ convergence in Finite Element for Poisson Equation

I have written a Matlab code to solve the equation $-u'' = f$ with conditions $u(0) = u'(1) = 0$ on the domain $x \in [0,1]$. I tested the code with $f(x) = -2, \forall x\in [0,1]$. I check the plot ...
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1answer
54 views

Rem function in Octave showing wrong result

I am trying to write an if statement that checks if 2 numbers are divisible before running some commands. The problem is, the rem function is giving some wrong results for certain number (2 is ...
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1answer
48 views

How to reduce computational time in DDE simulation on Matlab

I need to simulate a network of nodes. The weights of the edges are being given in a matrix . Due to the non-zero distances between the nodes, we consider time-delays, which are computed given the ...
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1answer
26 views

Software to find zero divisors of a ring

Are there some programs with packages that help to list all zero-divisors of the ring we desired? especially for the ring of Gaussian integers modulo $n$, $\mathbb{z}_n[i]$. Also want to find which of ...
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1answer
134 views

ODE45 and a variable that assumes multiple values during the timespan

I have tried in different ways to see what happens to voltage V and gating conductances m, n and h when, at time step x, current I switched from 0 to 0.1, and then at time step x + n it gets back to 0....
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1answer
179 views

Reason behind different outputs for Fast Fourier Transform in Numpy and Matlab

Here is the output of Numpy np.fft.ifft([0, 4, 0, 0]) array([ 1.+0.j, 0.+1.j, -1.+0.j, 0.-1.j]) # may vary Here is the output of Matlab ...
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1answer
95 views

Visualize a mesh from list of 3D point and faces

I have a list of vertices and faces. Now, I want to create a mesh using the given points and faces list and visualize it. Also, I want to play with the mesh by adding an extra point on the faces. Can ...
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2answers
178 views

How can I learn Scientific Python?

I am an intermediate user of Matlab and Mathematica, but I would really love to start learning Python language for scientific purposes (I am interested in Maths and Physics). Could please someone ...
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81 views

C.S.R method in finite element matrix assembly

I have solved the 2D Poisson equation using finite element method with simplex triangular element in MATLAB. First, I generated the triangular mesh using pdetool in ...
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1answer
48 views

Solving differential equation by setting vectorization `on` in MATLAB

This is a follow up to my previous question posted here. I've set up an ode system in MATLAB and I'm trying to vectorize the code to increase the speed of computation. The follow is the code for my ...
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1answer
85 views

Solving differential equation by specifying jacobian pattern

This is a follow up to my previous question posted here I'm trying to construct the sparsity pattern of the jacobian matrix to speed up the computation of a large system of odes. The following is the ...
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1answer
56 views

solving differential equations with jacobian pattern

I'm trying to compare the simulation time for solving a system of differential equations with and without jacobian pattern for a toy model using ode15s in MATLAB. ...
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43 views

How to solve this boundary value problem which has more unknown than equation on MATLAB

I need your helps about solving the problem below with MATLAB. I am trying to solve 2D Stress Wave Propagation problem by using FDTD(Finite difference time domain) method on the cylindrical coord. I ...
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74 views

Improve code of logarithmic quantizer

I am implementing a logarithmic quantizer which is defined as follows: $$ q(u) = \begin{cases} u_i , \frac{u_i}{1+\delta} < u < \frac{u_i}{1-\delta} \\ 0 , 0 \leq u \leq \frac{u_o}{1+\delta} \\ -...
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1answer
98 views

Anomaly in 2-body simulation error

I've generated a solution for a planet motion around the Sun (placed at the reference frame center). I wanted to test what would I get for the error of the method I'm using (Runge Kutta with 4 stages, ...
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60 views

Calling User defined Matlab Functions in Python with Matlab.engine API

I am trying to combine Matlab and python scripts and figure out if I can achieve a better solution in terms of the solver-runtime. A very simple optimization problem is used just for now. But I got in ...
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1answer
78 views

How to solve a Stiffness matrix?

I am quite new in this field. For my university I prepared a stiffness matrix to solve for a project group. This matrix consists of 450 equations with 450 unknows (it's a Matlab script) and I have the ...
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1answer
133 views

Verification of order of convergence of Implicit Euler Method to numerically solve Black-Scholes PDE

I'm trying to verify the order of convergence for implicit Euler method to numerically solve Black-Scholes PDE. Theory says that it should be $O(\Delta t + \Delta S^2).$ My code is working absolutely ...
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45 views

Estimating the Jacobian in Harmonic Balance Method

I am trying to solve a set of ODEs using the Harmonic Balance method. In order to do this, I need to compute the Jacobian of the set of equations. However I am very confused regarding the dimensions ...
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202 views

"This DAE appears to be of index greater than 1" daeic12 (line76) error code

Hi I am trying to solve a set of pde converted into ODE and DAE using central finite difference method. I have used the MATLAB 'solve' command to determine the coefficients of fictitious nodes for ...
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2answers
133 views

Exponent log to compute reciprocal power?

A MATLAB library seems to overcomplicate a computation: exp( (log(a) - log(b))/b ) which is mathematically equivalent (assuming real & positive ...
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2answers
205 views

Matlab - Compute approximative common eigenvectors basis between two matrices as a function of tolerance

I am looking for finding or rather building common eigenvectors matrix X between 2 matrices A and B such as : ...
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1answer
102 views

Numerical solution of ill-conditioned differential equation

I want to solve the following Cauchy problem \begin{equation} y' = y^2 + \frac{t^4 - 6t^3 + 12t^2 - 14t + 9}{(1+t)^2} \end{equation} with initial condition: $y(0) = 2$ for $t \in [0,1.6]$ using a 3 ...

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