Questions tagged [mpi]

Message Passing Interface - a standard and highly portable parallel programming interface for distributed memory systems.

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3answers
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C - OpenMP, MPI, Serial Program

I'm part of a Computational Science course and come from a non-programming background, so please forgive me my ignorance. I'm working on a set of code in C to numerically solve the Navier Stokes ...
21
votes
3answers
2k views

Parallel I/O options, in particular parallel HDF5

I have an application that can be trivially parallelized but its performance is to a large extent I/O bound. The application reads a single input array stored in a file that is typically 2-5 GB in ...
5
votes
3answers
1k views

Performance optimization or tuning possible for Scalapack Gemm?

I'm comparing the performance of distributed gemm, using Scalapack over OpenBLAS, with threaded gemm, using OpenBLAS. It seems quite hard for me to get scalapack to give better results than ...
11
votes
2answers
6k views

How does the computational cost of an mpi_allgather operation compare with a gather/scatter operation?

I'm working on a problem that can be parallelized by using a single mpi_allgather operation or one mpi_scatter and one mpi_gather operation. These operations are called within a while loop, so they ...
2
votes
1answer
2k views

Parallel vs Serial Thomas Algorithm

I am currently writing a code that solves a large tridiagonal matrix every iteration and runs for 1,000's of iterations. I am currently using a Thomas algorithm to solve the matrix serially. I found a ...