Questions tagged [visualization]

Questions relating to graphing and displaying numerical data

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30 views

3D log density plot in ParaView

I have a .csv file of thousands of (x,y,z) point particles that I would like to visualize in ParaView. I am able to plot a 3D scatterplot using the TableToPoints, and by decreasing point opacity I can ...
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10 views

Compute cell values and isosurface constant from density values of particles

I am trying to reconstruct the surface for a fluid simulation based on a list of particles using the Marching Cubes algorithm. From different resources, such as http://paulbourke.net/geometry/...
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1answer
66 views

User friendly scipy optimize wrapper package?

I'm creating too much throw away code for interfacing with the scipy optimize package in a user friendly way. (See code below for example of interruptible optimization that keeps last optimization ...
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0answers
30 views

Extracting raw data from a graph

I am supposed to do black-box modeling, I need the input and output data for training, however, the authors didn't agree to share the raw data with me, I can only use their publication where these ...
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1answer
129 views

How to efficently plot a finite element mesh solution with matplotlib

I am looking for the most efficient way to plot a mesh using matplotlib given the following information, coordinates of each node, what nodes belong to each element, and the value each node has. Below ...
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0answers
48 views

Properly sizing ParaView plots for LaTeX [closed]

I would like to make a visualization with ParaView for a paper. In order to have a high quality look, I would like the image to be, say, 300 dpi (or vector graphics). Moreover, since I know the column ...
2
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1answer
59 views

Visualization of 3D streamlines in ParaView

Essentially I want to use paraview to recreate a flow visualization like the one shown in the picture above. I am able to create the 3d flow lines using a pipeline that looks like ...
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0answers
17 views

Piecewise-linear Continuations vs Marching Squares/Cubes

It seems that both piecewise-linear continuation and marching squares are methods to produce iso-contours of a scalar function given the function's values on a grid. It seems that piecwise-linear ...
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1answer
50 views

Visualizing a trajectory in VMD

So, I've written a short python program simulating diffusion in 2D; in essence each particle is behaving like a random walker. The output is a 3D tensor, which for 4 particles and 10 timesteps, looks ...
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2answers
225 views

Recommended visualization tools for higher order finite element solutions?

Is there any software available which can directly render higher order finite element results? In particular, 3D finite elements would be preferable. It seems gmsh has some capability in this regard ...
3
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1answer
57 views

Plotting or Visualizing a Higher dimensional vector field

I am trying to visualize a higher dimensional vector field. Is there a way to do this. I asked this question here, I was told to post it here. As an example, one can use $$\begin{eqnarray} \dot{x}...
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1answer
69 views

Which statistical method should I use for comparing machine run-time of two algorithms?

I am comparing the run-time of two algorithm by solving different instance of the problems. Sample of my data: ...
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163 views

Showing date in Paraview's Annotate Time Filter

I have a time dependent data set where each frame corresponds to a certain date. I need to show the time annotation, much like what Annotate Time Filter does, but show the date instead of time as a ...
1
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1answer
200 views

Recreating this 3D density plot in ParaView

I want to do somethings similar to the plot found at the bottom of this blogpost, which I found via this post in ParaView, which seems to have been the original Application used to generate the plot. ...
0
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1answer
264 views

C++ library unstructured mesh writer to VTK format (or similar)

I am working on a 2D unstructured code in C++. I am using gmsh to generate a 2D unstructured mesh and reading it into my program with a library called ...
4
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2answers
495 views

3D contour mesh computation

I have the value of a function in three dimensions, $f(x, y, z)$, which varies smoothly. I would like to compute a 3D mesh where $f(x, y, z)$ has a particular value. Are there algorithms to do this? ...
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1answer
69 views

How to report non-monotonic runtimes in convergence plots

Let's say I have an algorithm that can be tuned by a parameter $h>0$ and is expected to converge as $h\to 0$. I want to study the computational complexity of this algorithm, i.e., how the ...
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1answer
105 views

temperature profile on axial direction of a chamber

I have a task to plot average temperature profile at each cross-section in the axial direction of a combustion chamber. I have $x$, $y$, $z$ coordinates data in excel as well as the corresponding ...
0
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1answer
168 views

Code to output VTK point data from decomposed domain for Paraview [closed]

I am developing a parallel 2D CFD code in C++ using PETSc and would like to use it as an opportunity to learn about VTK/Paraview. Right now, I have each processor output an ASCII file for the portion ...
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2answers
221 views

How to represent CFD result when I use grid-centered FVM?

My variables are stored at the center of the cells. How can I transfer these values to grid points? If I calculate the algebraic average value there may be a shock.
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0answers
469 views

3D visualization of the results of a 2D simulation in COMSOL

Considering that COMSOL forum is dead and CFD-online is not responsive, I'm gonna try asking my question here: I have done a 2D simulation in COMSOL multiphysics. I have two independent variables x ...
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1answer
136 views

How to create an optimal pizza delivery plan and how to visualize it

This question is quite open, and the actual problem comes from something you would probably consider an everyday niche (something you'd probably take for granted without really thinking about it). ...
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2answers
478 views

How do I migrate from Legacy VTK (Structured Points) to XML (Structured Grid)?

The documentation is fairly confusing and I know that I need to keep track of the actual grid location of my data. Writing a python script to convert binary data into this vtk format. I want to leave ...
4
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3answers
552 views

Pre/Post-processor for an academic finite element solver

I'm currently developing a finite element solver for academic/research purposes. Therefore I'm searching for a pre- and postprocessor in my toolchain. For a previous project I have used gmsh as a ...
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3answers
259 views

Visualizing the solutions of the Differential equations by varying different parameters

Actually I am interested in analyzing the soution to the ODE given as $\frac{dy}{dx} = A + By + C\sin(y) , y(l) = m$ and check how the solution gets affected like whether they exist or not depending ...
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1answer
266 views

3D visualization in MATLAB

I have a function of 3 variables like $V= f(r_1, p, r_2)$, I want to plot these 4 data in one graph to be able to capture the behavior of V with respect to all three variables. I searched a little ...
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2answers
340 views

In practice, what are the most useful ways to visualize 2d fluid flow, to tell what is happening in the simulation? Esp for verification and debugging

My simulation creates a 2d grid of vectors and scalars (EDIT of velocity, depth etc), at 60 frames per second. Is it correct? It looks sort of right... but who knows? How can I tell what's happening - ...
1
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1answer
2k views

Rescaling x-axis data in Paraview

I am working with VTK legacy files containing vector information. The files have incremental extension representing a file series as defined by this link. When applying the filter "Plot Selection ...
2
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1answer
256 views

15 noded triangular elements in paraview

I am modelling a soil medium in plane strain and would like to determine if paraview supports the 15-noded triangular element as shown on this link. On the documentation I am only seeing elements up ...
1
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1answer
114 views

VTK: Missing Streamlines due to error in Runge-Kutta method?

We are using Kitware VTK to visualize our models. When we display streamlines, it sometimes happens that a single streamline is left out. This can be especially seen when duplicating a model several ...
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1answer
62 views

Dynamic Analysis and Visualization of Laminate Mindlin Plate

I am trying to make the jump from a FEM plot of a static load applied to Mindlin laminate plate to a surface visualization of various Mode Shapes of the Laminate Plate. For that, I understand that the ...
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2answers
240 views

Alternatives to Mathematica

looking to introduce a mathematics program in my work, I would have 2 uses: In a classroom (high school level), providing good visualisation of physics ideas, and making my lecture more interactive. ...
1
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1answer
383 views

2d slice cut of tetrahedral mesh in tecplot 360 ex [closed]

I have made a 2d slice cut of a 3 dimension figure. When I select "mesh" to display the mesh on the slice, tecplot seems to connect the vertices in a strange way (it seems like two 2d meshes are ...
1
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1answer
246 views

Matlab: Creating a matrix that represents a colored, sinusoidally-modulated grating

I would like to draw a texture (in Matlab - Psychtoolbox) which is composed of a sinusoidally-modulated isoluminant (magenta & cyan) grating. I do have the RGB matrices of the two phases (for ...
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1answer
1k views

Visualization of quadtree & octree grids

So-called quadtree and octree grids are quite attractive for applications requiring adaptive mesh refinement. They are for example used in Gerris and Paramesh. Is anyone aware of a good file format ...
5
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2answers
6k views

CFD visualization workflow: Visit vs Paraview vs Tecplot and others

For those familiar with more of these tools than I am, what are the pros and cons of the various tools available? Right now I exclusively use Tecplot for CFD visualization, but it leaves a lot to be ...
3
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2answers
315 views

Can mainstream 3D software be a useful alternative in scientific visualisation?

I hope this is not a vague question. I would like to know if any researchers and students in this community have used or considered using 3D graphics software (such as Blender) or a game engine to ...
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3answers
368 views

How to plot a price level matrix in Matlab?

I have a matrix P of m rows and n columns. P(i,j) contains the price of occupying position i at time j. I want to plot this in Matlab but in a way to get some kind of density plot with different price ...
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1answer
50 views

What are the computational solutions for periodic visualization of simulation?

I like to set my scientific simulation programs to generate a picture after a certain number of iterations, such that I can follow what is happening and maybe cancel the simulation before the ...
9
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3answers
973 views

Second order tensor field visualization software

Is there an overview available over tensor visualization software? My personal preference is: A software which is free, well documented, and offers visualization techniques for different physical ...
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0answers
528 views

best package choice for visualizing agent based model simulations in python

This is a visualization/programming design problem. I am working on building a geospatial agent based model, meaning that there are multiple agents interacting within some particular spatial container....
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3answers
88 views

Software recommendation for plotting data from lab tests

I have several files of data created by LabView of hydraulic pressure testing over the course of a few days. This data is mostly time with various pressure and temperature measurements. Can you ...
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1answer
546 views

Is there a single C++ IDE packed with necessary scientific libraries for computing purpose?

I am basically looking for a good open source C++ IDE with scientific and visualization libraries built in. Can any one suggest few projects?
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2answers
87 views

What's the role of visualization?

I'm just starting at scientific computing and I'm seeing that results can be generated merely by plotting the variables. Of course more variables lead to more axes/dimensions so e.g. a three variable ...
2
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1answer
198 views

Creating a 3D spatial density map from simulation results

I want so visualize the spatial density for my simulation. The result of my simulation is a (time-dependent) system of large number (~100k) of moving particles in a confined space. Each particle has ...
3
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0answers
335 views

C60 orbital calculation

I am currently trying to reproduce the results published by Hands et al.1 using MATLAB. They calculated the bases of the C60 wave functions of HOMO, LUMO and LUMO+1. I did the following: I ...
1
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1answer
1k views

Paraview: Multiple csv files to time series

I have multiple CSV files with point-coordinates and, possibly, multiple data values attached to them, i.e., the rows look like x y z data1 data2 ... Is there ...
2
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2answers
521 views

Should a colorbar have constant values throughout a simulation?

The default option for matplotlib's pcolormesh (also true for VisIt and I think also true for Matlab) is to allow the maximum and minimum of a colorbar vary. Which ...
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0answers
36 views

Is there a library which allows for converting 4D implicit surfaces to simplexes?

I have a 4D surface in the form of the spin quadric. I would like to display this surface onto the screen. One of the method which I would like to use to present surface onto the screen is projection. ...
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0answers
166 views

Visualization of solution for a MAC grid

So I implemented the projection method as in Chorin (1969) for the solution of the Navier-Stokes Equations with the Boussinesq Approximation, using a 2nd Order accurate FD scheme. The primitive ...