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75 views

PDE discretization (via finite difference sheme) question

So after posting this question and reading all your comments I would like to make this new question (update). If you consider the three equations presented here: $$\frac{\partial \rho}{\partial t} +\...
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1answer
97 views

Crank-Nicholson for diffusion-advection vs diffusion equation

Let's consider the following 1D diffusion equation: $\frac{\partial u}{\partial t} = xk \frac{\partial}{\partial x}(\frac{1}{x}\frac{\partial u}{\partial x})$ where we assume that the diffusion ...
1
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1answer
204 views

Converge rate analysis: issue with time convergence

I have written a code which solves the incompressible formulation of the Navier-Stokes equations. It uses high-order methods both for time and spatial derivatives. I have been conducting convergence ...
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0answers
62 views

Roe Riemann solver for perfect gas mixture

I have working program for solving one-component 1D Euler equations with Roe's approximate Riemann solver constructed according to this pdf. My implementation of the algorithm is as follows ($\rho$ is ...
1
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2answers
246 views

Numpy FFT gives me a pulse shorter than it should be. Not sure what I am doing wrong

I've created a code (Python, numpy) that defines an ultrashort laser pulse in the frequency domain (pulse duration should be 4 fs), but when I perform the Fourier Transform using DFT, my pulse in the ...
1
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1answer
110 views

How to compute turbulent energy cascade

I need to compute the kinetic energy cascade using a finite volume solution in an equally spaced grid. I wonder if it is more correct to first compute the kinetic energy in the space (or time) domain, ...
1
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1answer
29 views

Four-noded rectangular element shape functions

I works on a project where I need to compute a modal analysis of an acoustic cavity. The cavity is rigid which translates the problem to the following equation $$\frac{\partial^2p}{\partial{}x^2}+\...
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0answers
42 views

When numerically computing eigenstates during a coupled-mode-space NEGF calculation, do phases matter?

The coupled mode space NEGF method for computing transistor characteristics involves expanding the electronic wavefunction in a mode space basis $$\Psi(x,y,z) = \sum_n\phi_n(x)\xi_n(y,z;x)$$ where $\...
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0answers
142 views

Using backward difference approximations for higher order derivatives

I am trying to solve a system of equations and have a question regarding the validity of my approach when implementing a fifth-order Cash-Karp Runge-Kutta (CKRK) embedded method with the method of ...
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1answer
56 views

Is there an upper bound for fill-ins for indefinite triangular factorization?

For $A=LU$, or $A=LDL^T$ factorization, bandwidth is preserved when there is no pivoting. This is true even for indefinite A, see question. However, when there is pivoting band structure is destroyed, ...
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0answers
176 views

Numerically solving a system of stiff nonlinear PDEs

I am attempting to numerically solve the following: \begin{align} \frac {\partial y_1}{\partial t} &= i(y_2y_3 - y_2^*y_3^*) - y_1 \tag{1}\\ \frac {\partial y_2}{\partial t} &= y_1^*y_3 - y_2 ...
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1answer
414 views

Feasibility checking

Consider the following optimization problem: $Min\;\;\; CX$ $AX\geq b$ $x_ix_j= x_s x_t\;\;\; i\neq j \neq s\neq t$ $x_j\geq 0;$ Where $A$ is the adjacency matrix and $C$ is a constant vector. ...
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0answers
9k views

Using scipy.quad to calculate difficult integral

When evaluating the integral below in python using scipy.quad I get the following warning: UserWarning: The maximum number of subdivisions (50) has been achieved. If increasing the limit yields no ...
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2answers
99 views

Writing a single PDE from a gradient equation

I have a differential system like this, where $\Phi$ is a scalar valued unknown function: $$\nabla\Phi = \left(f_1(x, y), f_2(x,y)\right)^T$$ I'm trying to solve it in a FEM solver (COMSOL ...
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2answers
313 views

Mass conservation in 1d diffusion by method of lines

I am solving the 1D diffusion equation by discretization using the method of lines. My problem is that I don't manage to ensure mass conservation. I have read many similar questions about the topic ...
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1answer
973 views

Improper Numerical integral

I am self teaching myself python and computational physics via Mark Newmans book Computational Physics the exercise is 5.17 of Computational Physics. I have to shift the limits of integration for an ...
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1answer
1k views

Convex Polygon Intersection

Determining the intersection of two convex polygons is one of the fundamental problems in computational geometry . I'm asking for an algorithm having: INPUT: Given two convex polygons P and Q in 2D (...
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1answer
318 views

Solving first versus second order PDE

I am trying to numerically solve a PDE, and just had a question as to the validity of a certain approach. For example, given the PDE: $$ \frac {\partial ^2 E}{\partial t^2} = - k\frac {\partial E}{\...
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0answers
59 views

Discretization used for steady linear elasticity - followup to previous question

This is a follow-up of my previous scicomp question (https://scicomp.stackexchange.com/posts/28863/edit). I figured I'd start a new thread on this as the question is a bit different from my previous ...
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1answer
142 views

FEM oscillations for polynomials of degree 1

I have the following eliptic 1-D problem $$-\mu u'' + \beta u' = 1$$ $$u(0) = u'(1) = 1$$ where $\mu = 10e^{-5}$ and $\beta = 1$. For this specific problem I am using the following space steps $h=[0.1,...
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0answers
61 views

Vortex Lattice Method: better basis than horse-shoe vortex?

I read several introductory texts about potential flow and vortex lattice method. Basically, it is fitting of some velocity field described by conditions on velocity at some control points using basis ...
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1answer
185 views

Use SLEPc from Matlab

Is there a direct way to use SLEPc from Matlab? I remember that in some old manuals there was some Matlab interface. However, in the last one, I cannot find any reference to this. For me, it would be ...
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0answers
310 views

Structural mechanics traction boundary condition question

In structural mechanics, are the boundary conditions "free surface," "Traction free", "stress free" all equivalent Neumann boundary conditions?
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0answers
39 views

Comparison of convection time - theoretical value vs computed

This is a follow up to my previous post here, I'm solving for convection in 1D $$\frac{\partial C}{\partial t} = - v\frac{\partial C}{\partial x}$$ The discretization of the above equation is ...
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0answers
1k views

Crank-Nicolson for 2nd- and 4th-order finite differences

I modeled the heat equation, $$ u_t = au_{xx} $$ using the common 2nd-order Crank-Nicolson scheme, $$ \frac{u^{n+1}_i-u^{n}_i}{dt} = \frac{a}{2\,dx}\left(u_{i-1}^{n+1}+u_{i+1}^{n+1}-2u_i^{n+1} + u_{i-...
1
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1answer
158 views

Where can an undergraduate go to find cores on a budget?

I've may have reached a point in my neural network research that I cannot continue without significant financial investment. I am using neuroevolution to evolve a network on the EMNIST data set. It ...
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2answers
107 views

Solving a parameter estimation problem using trajectory optimization

This is a follow-up to my previous question here I've the following system of equations for studying information flow in the below graph, $$ \frac{d \phi}{dt} = -M^TDM\phi + \text{noise ...
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3answers
180 views

Optimization of a blackbox function

Let's say that we have an objective function $f(\mathbf x,\mathbf y)$ which has the parameters $\mathbf x=[x_1\ldots x_n]$ and $\mathbf y=[y_1\ldots y_n]$. Here, $\mathbf y$ is a blackbox variable ...
1
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1answer
527 views

Crank-Nicolson method for inhomogeneous advection equation

Suppose we have the inhomogeneous advection equation $$\left(\frac{\partial}{\partial x}+\frac{1}{c}\frac{\partial}{\partial t}\right)u(t,x)=v(t,x)$$ for $u,v:\mathbb{R}\times\mathbb{R}\to\mathbb{R}$ (...
1
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1answer
1k views

How to define the derivative for Scipy.Optimize.Minimize

I am trying to use scipy.optimize.minimize to minimise a quadratic objective function: $f(x) =x^\top Q x$. As a start, I have successfully implemented this using the built-in Nelder-Mead Simplex ...
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0answers
65 views

Why is my numerical solution to a set of ODEs infinite?

I am trying to solve the following linear PDEs $$\frac{\partial u_x}{\partial x}=-[i\omega b_{||}+\nabla_\perp u_\perp],$$ $$\frac{\partial b_{||}}{\partial x}=-\frac{i}{\omega}\mathcal{L}u_x,$$ $$\...
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1answer
300 views

Linear solve using CHLOMOD in C

I am using the open-source CHLOMOD (as here http://faculty.cse.tamu.edu/davis/suitesparse.html) in order to solve a linear system Ax=b (performing A/b=x) in my domain decomposition code but I am ...
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1answer
179 views

Underdetermined/overdetermined polynomial interpolation

I am trying to apply a polynomial interpolation to 340 points in a 4D space, i.e., $$f(x,y,z)=k\, .$$ What I would like to understand is this: if I use a 6th order polynomial I will end up with 343 ...
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1answer
27 views

How to change the value of a variable at some point lying in the time interval of solver in solve_ivp

The following code solves a differential equation with scipy: ...
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1answer
43 views

Confirmation of FSAL property for IMEX methods by Kennedy and Carpenter

This question is a continuation of Fourth order IMEX Runge-Kutta method and Implementation details for high order IMEX methods by Kennedy and Carpenter. I need confirmation that ARK3(2)4L[2]SA by ...
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2answers
634 views

Mixed formulation of the Poisson equation (FEM)

I'm solving the Dirichlet problem for the Poisson equation in a 2d domain $D$: $$ \begin{cases} \Delta u = 0 \quad \text{in $D$}, \\ u|_{\partial D} = u_0. \end{cases} $$ I'm interested in ...
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0answers
69 views

Comparison of diffusion time - theoretical value vs computed

This is a follow up to my previous post I've been trying to compare the diffusion time obtained from theoretical derivation(answered in my previous post) and what is obtained computationally, for a ...
0
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1answer
95 views

Free access to Xeon Phi clusters

Apologies if this is not the right forum to ask, but there has been a somewhat related question here. I am working on a piece of software (nonlinear constrained optimisation, coded in C++11 and ...
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1answer
98 views

Question on comparing the accuracy of numerical schemes

This is a follow up to my previous post here I'm solving the following 1D transport equation . $$\frac{\partial C}{\partial t} = D\frac{\partial ^2 C}{\partial x^2}-v\frac{\partial C}{\partial x}$$...
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1answer
93 views

Most suitable particle-tracking software

I have a problem for which I am trying to determine the most suitable software to use. Here is a brief description of the problem. I have a mixture of inertial particles A and B with different ...
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0answers
31 views

Minimizing the ratio of two specific non negative quadratic convex functions

$F$ is $m\times m$ diagonal, with real non negative elements $D$ is $n \times m$ complex $P$ is $n \times 1$ complex $A$ is $m \times 1$ complex. Minimize $\Gamma(A)$, with respect to $A$. $$\...
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2answers
367 views

closed form approximation of matrix inverse with special properties

I'm trying to find some theory to help me explicitly express the inverse of a matrix (or a close approximation of the inverse). My matrix has the following properties: invertible positive definite ...
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1answer
643 views

roots of polynomials of high degree: LinAlgError: Eigenvalues did not converge

I wrote a simple script to generate random polynoimals $\displaystyle f(z)= \sum_{k=0}^N a_k \frac{z^k}{\sqrt{k!}} $ of high degree and find their roots. For more discussion on random polyomials see ...
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2answers
284 views

Calculating integrals for a function approximated by Chebyshev polynomials

Setup (complete, but all very standard): My problem is how to best calculate the cumulative integral of a function which comes out of Spectral Collocation with a chebyshev basis. Take some function $...
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1answer
174 views

How to set an initial guess for the iterative solver in Comsol?

How to set the initial guess for the iterative solver GMRES or FGMRES for linear problems (Helmholtz equation of RF module) in Comsol?
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2answers
2k views

scipy.integrate.odeint: how can odeint access a parameter set that is evolving independently of it?

I might have some non-linear ODEs that are being solved by scipy.integrate.odeint. However, a parameter at each time step might have to be updated by using a non-DE ...
0
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1answer
4k views

Python Finite Difference Schemes for 1D Heat Equation: How to express for loop using numpy expression

Hello all, I've recently been introduced to Python and Numpy, and am still a beginner in applying it for numerical methods. I've been performing simple 1D diffusion computations. I suppose my ...
0
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1answer
126 views

Calculation of error

I have written a code in which I find the approximation of the solution of this elliptic problem. I calculated the error using the following part of code: http://pastebin.com/7b5mmuRW but I get the ...
0
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1answer
243 views

Euler-Bernoulli beam element versus continuum beam element

I am using OpenSees to model a simply supported beam with a point load in the middle. The model is in consistent units. The beam is made up of bilinear quad elements. I have used 30 elements along the ...
0
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0answers
41 views

state of art non smooth convex optimization [duplicate]

Basically, I am trying to implement non-smooth convex optimization in c++. I am wondering what is the state of art condition of non-smooth convex optimization. For example, what's the best method ...

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