Given the functional: $$ F[\mathbf{x}]=\frac{1}{2}[\mathbf{x}^{\text{T}} * D(\mathbf{x})]-\frac{1}{2}[\mathbf{x}^{\text{T}} * \mathbf{Ax}]-\frac{1}{2}\mathbf{x}^{\text{T}}(0)\mathbf{x}(t) $$
Where $\mathbf{A}$ is symmetric, $\mathbf{x}(0)$ being the initial condition, $\mathbf{x}(t)$ is continuous, and: $$ [\mathbf{f}^{\text{T}} * \mathbf{g}]=\int^{t}_0 \mathbf{f}^{\text{T}}(t-\tau)\mathbf{g}(\tau)\,\text{d}\tau $$ and: $$ D\left(\cdot\right)=\frac{\text{d}}{\text{d}t}\left(\cdot\right) $$
We take the variation as: $$ \delta F\left[\mathbf{x}\right]=\left.\frac{\partial}{\partial \varepsilon} F\left[\mathbf{x}+\varepsilon\delta\mathbf{x}\right]\right|_{\varepsilon=0} $$ Functional at the varied function is then: $$ F\left[\mathbf{x}+\varepsilon\delta\mathbf{x}\right]=\frac{1}{2}[\mathbf{x}^{\text{T}}+\varepsilon\delta\mathbf{x}^{\text{T}} * D(\mathbf{x}+\varepsilon\delta\mathbf{x})]-\frac{1}{2}[\mathbf{x}^{\text{T}}+\varepsilon\delta\mathbf{x}^{\text{T}} * \mathbf{A}\left(\mathbf{x}+\varepsilon\delta\mathbf{x}\right)]-\frac{1}{2}\left(\mathbf{x}^\text{T}(0)+\varepsilon\delta\mathbf{x}^\text{T}(0)\right)\left(\mathbf{x}(t)+\varepsilon\delta\mathbf{x}(t)\right) $$ The individual terms being: $$ \frac{1}{2}[\mathbf{x}^{\text{T}}+\varepsilon\delta\mathbf{x}^{\text{T}} * \mathbf{A}\left(\mathbf{x}+\varepsilon\delta\mathbf{x}\right)]=\frac{1}{2}[\mathbf{x}^{\text{T}}* D(\mathbf{x})]+\frac{1}{2}\varepsilon[\mathbf{x}^{\text{T}}* D(\delta\mathbf{x})]+\frac{1}{2}\varepsilon[\delta\mathbf{x}^{\text{T}}* D(\mathbf{x})]+\frac{1}{2}\varepsilon^2[\delta\mathbf{x}^{\text{T}}* D(\delta\mathbf{x})] $$ $$ \frac{1}{2}[\mathbf{x}^{\text{T}}+\varepsilon\delta\mathbf{x}^{\text{T}} * \mathbf{A}\left(\mathbf{x}+\varepsilon\delta\mathbf{x}\right)]=\frac{1}{2}[\mathbf{x}^{\text{T}} * \mathbf{A}\mathbf{x}]+\frac{1}{2}\varepsilon[\mathbf{x}^{\text{T}}* \mathbf{A}\delta\mathbf{x}]+\frac{1}{2}\varepsilon[\delta\mathbf{x}^{\text{T}} * \mathbf{A}\mathbf{x}]+\frac{1}{2}\varepsilon^2[\delta\mathbf{x}^{\text{T}} * \mathbf{A}\delta\mathbf{x}] $$ $$ -\frac{1}{2}\left(\mathbf{x}^\text{T}(0)+\varepsilon\delta\mathbf{x}^\text{T}(0)\right)\left(\mathbf{x}(t)+\varepsilon\delta\mathbf{x}(t))\right)=-\frac{1}{2}\mathbf{x}^\text{T}(0)\mathbf{x}(t)-\frac{1}{2}\varepsilon\mathbf{x}^\text{T}(0)\delta\mathbf{x}(t)-\frac{1}{2}\varepsilon\delta\mathbf{x}^\text{T}(0)\mathbf{x}(t)-\frac{1}{2}\varepsilon^2\delta\mathbf{x}^\text{T}(0)\delta\mathbf{x}(t) $$ We can differentiate these with respect to $\varepsilon$ and then set it to zero, adding them up leads to: $$ \delta F\left[\mathbf{x}\right]=\frac{1}{2}[\mathbf{x}^{\text{T}}* D(\delta\mathbf{x})]+\frac{1}{2}[\delta\mathbf{x}^{\text{T}}* D(\mathbf{x})]-\frac{1}{2}[\mathbf{x}^{\text{T}}* \mathbf{A}\delta\mathbf{x}]-\frac{1}{2}[\delta\mathbf{x}^{\text{T}} * \mathbf{A}\mathbf{x}]-\frac{1}{2}\mathbf{x}^\text{T}(0)\delta\mathbf{x}(t)-\frac{1}{2}\delta\mathbf{x}^\text{T}(0)\mathbf{x}(t) $$ We also can say: $$ \frac{1}{2}[\mathbf{x}^{\text{T}}* \mathbf{A}\delta\mathbf{x}]=\frac{1}{2}[\delta\mathbf{x}^{\text{T}}* \mathbf{A}^{\text{T}}\mathbf{x}] $$ Since $\mathbf{A}$ is symmetric, this just means that: $$ \frac{1}{2}[\mathbf{x}^{\text{T}}* \mathbf{A}\delta\mathbf{x}]=\frac{1}{2}[\delta\mathbf{x}^{\text{T}}* \mathbf{A}\mathbf{x}] $$ Substituting this back into the varied functional yields: $$ \delta F\left[\mathbf{x}\right]=\frac{1}{2}[\mathbf{x}^{\text{T}}* D(\delta\mathbf{x})]+\frac{1}{2}[\delta\mathbf{x}^{\text{T}}* D(\mathbf{x})]-\frac{1}{2}[\delta\mathbf{x}^{\text{T}}* \mathbf{A}\mathbf{x}]-\frac{1}{2}[\delta\mathbf{x}^{\text{T}} * \mathbf{A}\mathbf{x}]-\frac{1}{2}\mathbf{x}^\text{T}(0)\delta\mathbf{x}(t)-\frac{1}{2}\delta\mathbf{x}^\text{T}(0)\mathbf{x}(t) $$ Notice, now we have two similar terms which can be grouped, doing so yields: $$ \delta F\left[\mathbf{x}\right]=\frac{1}{2}[\mathbf{x}^{\text{T}}* D(\delta\mathbf{x})]+\frac{1}{2}[\delta\mathbf{x}^{\text{T}}* D(\mathbf{x})]-[\delta\mathbf{x}^{\text{T}}* \mathbf{A}\mathbf{x}]-\frac{1}{2}\mathbf{x}^\text{T}(0)\delta\mathbf{x}(t)-\frac{1}{2}\delta\mathbf{x}^\text{T}(0)\mathbf{x}(t) $$ We can lump this into the other term which a variation: $$ \delta F\left[\mathbf{x}\right]=\frac{1}{2}[\mathbf{x}^{\text{T}}* D(\delta\mathbf{x})]+\frac{1}{2}[\delta\mathbf{x}^{\text{T}}* \left(D(\mathbf{x})-2\mathbf{A}\mathbf{x}\right)]-\frac{1}{2}\mathbf{x}^\text{T}(0)\delta\mathbf{x}(t)-\frac{1}{2}\delta\mathbf{x}^\text{T}(0)\mathbf{x}(t) $$ Now, if we say that $\delta\mathbf{x}(0)=0$, we get: $$ \delta F\left[\mathbf{x}\right]=\frac{1}{2}[\mathbf{x}^{\text{T}}* D(\delta\mathbf{x})]+\frac{1}{2}[\delta\mathbf{x}^{\text{T}}* \left(D(\mathbf{x})-2\mathbf{A}\mathbf{x}\right)]-\frac{1}{2}\mathbf{x}^\text{T}(0)\delta\mathbf{x}(t) $$ This is the form I would use for discretizing, but we can show which system it is stationary with respect to. Taking integration by parts on the first term yields: $$ \frac{1}{2}[\mathbf{x}^{\text{T}}* D(\delta\mathbf{x})]=\frac{1}{2}\mathbf{x}^{\text{T}}(0)\delta\mathbf{x}(t)-\frac{1}{2}\mathbf{x}^{\text{T}}(t)\delta\mathbf{x}(0)+\frac{1}{2}[\delta\mathbf{x}^{\text{T}}* D(\mathbf{x})] $$ Substituting this back in yields (with $\delta\mathbf{x}(0)=0$): $$ \delta F\left[\mathbf{x}\right]=[\delta\mathbf{x}^{\text{T}}* \left(D(\mathbf{x})-\mathbf{A}\mathbf{x}\right)] $$ Which implies: $$ D(\mathbf{x})-\mathbf{A}\mathbf{x}=0 $$ Or: $$ \frac{d\mathbf{x}(t)}{dt}= \mathbf{Ax}(t) $$
Again, the first variation of this functional (with no IBP) is:
$$ \delta F[\mathbf{x}]=\frac{1}{2}[\mathbf{x}^{\text{T}} * D(\delta\mathbf{x})]+\frac{1}{2}[\delta\mathbf{x}^{\text{T}} * \left(D(\mathbf{x})-2\mathbf{Ax}\right)]-\frac{1}{2}\mathbf{x}^{\text{T}}(0)\delta\mathbf{x}(t) $$
I now discretize this over the interval $\left[0,\Delta\right]$, using the approximation: $$ \mathbf{x}(t)=\mathbf{x}_0 N_0(t)+\mathbf{x}_1 N_1(t) $$ $$ \delta\mathbf{x}(t)=\delta\mathbf{x}_0 N_0(t)+\delta\mathbf{x}_1 N_1(t) $$ Where: $$ N_0(t)=1-\frac{t}{\Delta} $$ And $$ N_1(t)=\frac{t}{\Delta} $$
The result is: $$ \delta F[\mathbf{x}] \approx \delta\mathbf{x}_1^{\text{T}}\left(\left(\frac{1}{2}\mathbf{I}-\frac{\Delta}{6}\mathbf{A}\right)\mathbf{x}_1-\frac{\Delta}{3}\mathbf{A}\mathbf{x}_0-\frac{1}{2}\mathbf{x}(0)\right) $$
Given that $\delta\mathbf{x}_1$ is some arbitrary discrete variation, we can say that it's coefficient must be zero: $$ \left(\frac{1}{2}\mathbf{I}-\frac{\Delta}{6}\mathbf{A}\right)\mathbf{x}_1-\frac{\Delta}{3}\mathbf{A}\mathbf{x}_0-\frac{1}{2}\mathbf{x}(0)=0 $$
My question is, is the following also true?:
$$ \left(\frac{1}{2}\mathbf{I}-\frac{\Delta}{6}\mathbf{A}\right)\mathbf{x}_{i+1}-\frac{\Delta}{3}\mathbf{A}\mathbf{x}_i-\frac{1}{2}\mathbf{x}(0)=0 $$