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Results tagged with data-management
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user 34
For questions about how best to process and store the data produced from calculations.
5
votes
Accepted
suggestion for managing simulation runs?
TLDR
Use Python to manage/modify your input and coral your output, and use HDF5 to organize/store your data. As complex as it might seem at first it'll still be simpler than SQL-anything.
Longer answ …
- 1,370
2
votes
3
answers
402
views
Translating from SBML to Petri Net (matrix representation)
Is there a piece of software that can easily take a representation of a biochemical network from a SBML file and translate it into a Petri Net?
Specifically, I'm looking for something that can give …
- 1,370
16
votes
2
answers
2k
views
Best practice for storing hierarchical simulation data
TL,DR
What is the accepted best practice in scientific computing circles for storing large quantities of hierarchically structured data? For example, SQL does not play nicely with large sparse matrice …
- 1,370
2
votes
3
answers
955
views
List of data munging libraries
I am trying to put together a complete list of all of the tools that computational scientists have found useful when trying to munge data, i.e. take data in one format, extract the useful bits, and pu …
- 1,370