I am by no means an expert on LLL, but I have worked with it before. Please correct me if this answer is in some way incorrect.
Define a basis $\beta = \{v_1,v_2,\ldots,v_n\}$ for $\mathbb{R}^n$. Then the lattice $L$ generated by $\beta$ is the set of integer linear combinations of $\beta$:
$$
L = \{ m_1v_1 + \cdots + m_nv_n : m_i \in \mathbb{Z} \}
$$
This means the $\beta$-coordinate representation of vectors in $L$ are entirely integers.
The basis $B$ is a set of vectors in $L$ that spans $L$ by integer linear combinations of the vectors in $B$. Since each of the vectors in $B$ are in $L$, they must have integer coordinates with respect to $\beta$, but they may not have integer entries as vectors in $\mathbb{R}^n$.
To make this concrete, consider the lattice $L$ spanned by $\beta = \{ (\sqrt{2},0), (0,\sqrt{3}) \}$. Then $B = \{(\sqrt{2},0),(\sqrt{2},\sqrt{3}) \}$ is a basis for $L$. Note that the vectors in $B$ have irrational entries. The coordinates of $(\sqrt{2},0)$ in the basis $\beta$ is $(1,0)$ and the coordinates of $(\sqrt{2},\sqrt{3})$ in $\beta$ is $(1,1)$. So while the vectors in $B$ do not have integer values, they do have integer coordinates with respect to the basis $\beta$.